PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_50.58
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 377aa    MW: 43333.4 Da    PI: 6.2797
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_50.58genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35141052102
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
                 HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                                  Fl k+y++++d+ ++ ++sws+ng sf+v+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF++
  evm.model.supercontig_50.58  14 FLLKTYDMVDDPITNAVVSWSRNGCSFIVWNPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKSDPDQ---------WEFSN 86 
                                  9**************************************************************99988.........***** PP

                                  SXXXXXXXXXXXXXXXXXX CS
                 HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                                  + F +g++ell++i+r+k 
  evm.model.supercontig_50.58  87 EDFIRGERELLKNIHRRKP 105
                                  ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-38498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.16E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.2E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDSSQSSSNS PPPFLLKTYD MVDDPITNAV VSWSRNGCSF IVWNPPEFAK DLLPKYFKHN  60
NFSSFVRQLN TYGFRKSDPD QWEFSNEDFI RGERELLKNI HRRKPVHSHS TQNQSSSSSS  120
LTETEKQEFE REINRLKHDK NSLHLELQKR QRETKDFKLQ RQLAHERLHN LEYRQRQLTS  180
LLTQLMQQSQ LHNKKRRLFK LDEDISLIVH KENMAPINGL ILDPERIDKL ESSLKLWENI  240
LLGAGETLAD YNTISQLSTV TVTELHTSSE DNAYGEPCSP SFRPSTLHLK EVHSSPELTS  300
STCVIDSPPT SPIIINTRPK SLDTDVNPNL TSDSIGEALN PPATTMVNDH FWEQFLTEIP  360
QLYVEQEIQS RGSNYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-251210318120Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_50.58
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898478.10.0heat stress transcription factor A-4c-like
TrEMBLA0A061DLG01e-123A0A061DLG0_THECC; Winged-helix DNA-binding transcription factor family protein, putative
STRINGevm.model.supercontig_50.580.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167341012
Representative plantOGRP52351020
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.14e-56HSF family protein