PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_51.138
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 286aa    MW: 32561.4 Da    PI: 6.0504
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_51.138genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.2e-172370148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl
  evm.model.supercontig_51.138 23 RGPWTAEEDELLATYIKREGEGRWRTLPSRAGLQRCGKSCRLRWMNYL 70
                                  89********************************************97 PP
2Myb_DNA-binding45.51.7e-1476118145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+
  evm.model.supercontig_51.138  76 RGRIAPDEEDLIIRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWN 118
                                   678889****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6221870IPR017930Myb domain
SuperFamilySSF466891.39E-2820117IPR009057Homeodomain-like
SMARTSM007174.0E-122272IPR001005SANT/Myb domain
PfamPF002499.1E-152370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-222477IPR009057Homeodomain-like
CDDcd001677.12E-102570No hitNo description
PROSITE profilePS5129424.25671125IPR017930Myb domain
SMARTSM007177.0E-1375123IPR001005SANT/Myb domain
PfamPF002496.5E-1377118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-2378126IPR009057Homeodomain-like
CDDcd001674.86E-1081118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MRKPSASSSS ASITRKTPEG IKRGPWTAEE DELLATYIKR EGEGRWRTLP SRAGLQRCGK  60
SCRLRWMNYL RPSIKRGRIA PDEEDLIIRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNIH  120
ISKKLISQGI DPRTHKPINL NPNPDSLQNP PPNSLNLHEL PATPIPRRVD DHDQDRLDCD  180
KFYNQQMIDG VLMENHFDGF MVDPLPSSGH GHNNNDEDYI QNSNEDTFSA FLDSLIINNE  240
NAFMNLEQQQ PAGNASAEDT FFHANIWEAE VESTMVSLLI DEKTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24231257108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_51.138
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898173.10.0transcription repressor MYB5-like
SwissprotQ388501e-73MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A067KXJ91e-100A0A067KXJ9_JATCU; MYB family protein
TrEMBLB9I5W51e-100B9I5W5_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_51.1380.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-75myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]