PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_51.23
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 235aa    MW: 25506.2 Da    PI: 6.9607
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_51.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-194493255
                          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  y+GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a+kkl+g
  evm.model.supercontig_51.23 44 TYRGVRQRT-WGKWVAEIREP---N-RgTRLWLGTFNTSLEAATAYDEAAKKLYG 93
                                 69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-2843101No hitNo description
SuperFamilySSF541712.22E-2044102IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2944102IPR001471AP2/ERF domain
PfamPF008478.7E-144493IPR001471AP2/ERF domain
PROSITE profilePS5103221.1444101IPR001471AP2/ERF domain
SMARTSM003802.6E-3244107IPR001471AP2/ERF domain
PRINTSPR003671.0E-94556IPR001471AP2/ERF domain
PRINTSPR003671.0E-96783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MANTRRSSSS SAAAVSSGAK KPSMGRSRKG CMKGKGGPEN ALCTYRGVRQ RTWGKWVAEI  60
REPNRGTRLW LGTFNTSLEA ATAYDEAAKK LYGASAKLNL QHNHIHHHHH HHQNYFPTTF  120
SNNGNIGSDS SSSAGSSTES SVQGDQDLMM MTTNMVGAVS VDEHTRVNCS ADGFLFSSSV  180
VGEDQNMYWV PELAVENDFL ELTDIGVLMG GGGNDDHHDE LKGWNIGLQY PWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1645100359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A2e-15441041475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_51.23
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898140.11e-176dehydration-responsive element-binding protein 2D-like
TrEMBLA0A1R3IPU02e-54A0A1R3IPU0_COCAP; Uncharacterized protein
STRINGevm.model.supercontig_51.231e-176(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-47ERF family protein