PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_51.84
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 187aa    MW: 21485.6 Da    PI: 8.8393
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_51.84genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-065981123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                 y C++C+k Fs++  L  H++ H
  evm.model.supercontig_51.84 59 YACKYCNKKFSTSQALGGHQNAH 81
                                 89******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-75686No hitNo description
Gene3DG3DSA:3.30.160.604.9E-65685IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.3625986IPR007087Zinc finger, C2H2
PfamPF139123.1E-65983IPR007087Zinc finger, C2H2
PROSITE patternPS0002806183IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKRKAVMELE LDLKLSCVPV DQKEVNLLGH VDVDYSKKNL DASSDLHQVL SPTKFDKSYA  60
CKYCNKKFST SQALGGHQNA HKHEREMLKR NKTFDHMGVF VGNWCPYRSF DRPFGVDMSS  120
MIHKPLYSLP NYRIPRSNVN AYEQFNMPNY QSDLQLGSPK MDNYRIPTMM MNQAPEATEV  180
DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_51.84
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_51.841e-138(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2130055
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-15C2H2 family protein