PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_52.26
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 680aa    MW: 75898.9 Da    PI: 5.2801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_52.26genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.8e-14491536454
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L
  evm.model.supercontig_52.26 491 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQL 536
                                  7999**********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-549196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-20489563IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18491553IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.65E-15491541No hitNo description
PfamPF000101.7E-11491536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-17493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MAAPVASQLQ STLQAAVQSV QWTYCLFWQF CPQQGILVWA DGYYNGAIKT RKTVQPMEVT  60
AEEASLQRSQ QLRELYESLS IGDTNQPTKR PCAALSPEDL TETEWFYLMC VSFSFPPGLG  120
LPGKAYARRQ HVWLTGTNEV DSKTFSRAIL AKRAAGYNIL LQTVVCIPLL DGVVELGTVD  180
KVQEDVRFVE HVKSFFSDHL HQQKNVQQPK PALSEHSTSN PPSSDHHHFH SPLVPGIYLS  240
AAQAVQVDDE VDEDDDEEED DEEEEEPESD SADIGHTSRS IGPDKTQSVA AAEQSELMQL  300
DLSEDIRLGS PDDASNNLDS DFHMLAVSQS PADQQRRSDS LRAESCQRWS PVLQEPLNGS  360
RVQPPSGEDM TQEDSHYSQT VSTILLSQST WWAESTSNVA SYGTYSIQSA FAKWTNRFSD  420
QYHHHRDVEA APSCAQRLLK YVLFTVPLLH NKYREDNSQK RPDDGEAAAA TPRMKKGGGG  480
GTAAQDELSA NHVLAERRRR EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLLKKI  540
QELETRNRQV ELEQHLSTTT TSSGSGLPKA QRWGRVPGKK KKKVMDGGDK KKAVEDGVEV  600
SIIENDALLE LQCGYREGLL LDIMQLLREL RIETTGVQSS YSNGIFMAEI RAKVKENVNG  660
KKASIVEVKR AINQTIPHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-19918448219Transcription factor MYC3
4ywc_A1e-19918448219Transcription factor MYC3
4ywc_B1e-19918448219Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1495500ERRRRE
2496501RRRREK
3578590KKKKKVMDGGDKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_52.26
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898078.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGevm.model.supercontig_52.260.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94222836
Representative plantOGRP52261116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-102bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]