PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_52.97
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 335aa    MW: 35400.4 Da    PI: 7.8037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_52.97genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09157201554
                                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                  h+++Er RR++i +++  L+el+P+ +      K + a++L + v+Y+k L
  evm.model.supercontig_52.97 157 HSIAERLRREKIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 201
                                  99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.04E-11150206No hitNo description
SuperFamilySSF474594.06E-15150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.132152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15154211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7157201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-11158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASNNPNEAA SDDFLEQILG LPNFASADTG LTGHDGGLGG TAASVPPMML QLSSSDGSAH  60
MTALTAGSGG AGAAAGFHTP VFPLGLSLEQ GKGGFLKPED ASGSGKRFRD DVVDGRGSSV  120
KNVFHGQPMP TTVPAAPHPP VMRPRVRARR GQATDPHSIA ERLRREKIAE RIRALQELVP  180
SVNKTDRAAM LDEIVDYVKF LRLQVKVLSM SRLGGAGAVA PLVTDIPLSS VEVIDYKNIK  240
MAVSPVIIRK LSLLFVKQDE TGEGGRSQPA WEKWSNDGTE RQVAKLMEEN VGAAMQFLQS  300
KALCIMPISL ATAIYHAQPP DTSSLVKPEA NPPP*
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_52.97
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898024.10.0transcription factor UNE12 isoform X1
SwissprotO227681e-138UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2I4DYZ21e-164A0A2I4DYZ2_JUGRE; transcription factor UNE12-like
STRINGevm.model.supercontig_52.970.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-124bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]