PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_53.118

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 347aa MW: 38193.1 Da PI: 6.5113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_53.118	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2.1e-14	164	210	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L evm.model.supercontig_53.118 164 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 210 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.907	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.4E-12	164	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-15	165	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-14	165	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-13	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.77E-5	174	213	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.6E-4	246	301	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MCAKKEDDQG ECSQAMIHNM QGFQEQLLLH QQQQGNDIYG ITGTRAGAGG GFLFPHEVPP 60 ILPWSLPPVH SFNPTHFSPN QPGDHDPFLV PPPPPPPPIS SYGSLFNRRA HGLQFAYDGT 120 PSTDHLRIIS EMVQPGGGPF GLQSELGKLT AQEIMDAKAL AASKSHSEAE RRRRERINNH 180 LAKLRSLLPS TTKTDKASLL AEVIQHVKEL KRQTSLIAET SPVPTEVDEL TVDASDEDGK 240 FIIKASLCCE DRSDLLPDLI KTLKALRLRT LKAEITTLGG RVKNVLFITG EDDSNDQQQQ 300 QQQQYCISSI QEALKAVMEK SSSDESSSGN VKRQRTNINI IEHRSL*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MCAKKEDDQG ECSQAMIHNM QGFQEQLLLH QQQQGNDIYG ITGTRAGAGG GFLFPHEVPP  60
ILPWSLPPVH SFNPTHFSPN QPGDHDPFLV PPPPPPPPIS SYGSLFNRRA HGLQFAYDGT  120
PSTDHLRIIS EMVQPGGGPF GLQSELGKLT AQEIMDAKAL AASKSHSEAE RRRRERINNH  180
LAKLRSLLPS TTKTDKASLL AEVIQHVKEL KRQTSLIAET SPVPTEVDEL TVDASDEDGK  240
FIIKASLCCE DRSDLLPDLI KTLKALRLRT LKAEITTLGG RVKNVLFITG EDDSNDQQQQ  300
QQQQYCISSI QEALKAVMEK SSSDESSSGN VKRQRTNINI IEHRSL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_53.118

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021897825.1	0.0	transcription factor bHLH30
Swissprot	Q9S7Y1	1e-110	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0B0N1U5	1e-173	A0A0B0N1U5_GOSAR; Transcription factor bHLH30-like protein
STRING	evm.model.supercontig_53.118	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7048	28	43
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-86	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_53.118

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]