PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_53.164

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

NAC

Protein Properties

Length: 135aa MW: 15149 Da PI: 7.5053

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_53.164	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.1	9.1e-29	26	105	1	79
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratk 79 l+pGfrFhPtdeelv++yLk+kv +k++++ ++i evdiyk+ePw+L +++k++++ewyfF+ dkky +g r nrat evm.model.supercontig_53.164 26 LAPGFRFHPTDEELVSYYLKRKVLNKPVRF-NAIGEVDIYKHEPWELAdySRLKTRDQEWYFFIALDKKYGNGARMNRATG 105 579**********************999.89**********8544899999*******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-30	17	105	IPR003441	NAC domain
PROSITE profile	PS51005	26.978	26	134	IPR003441	NAC domain
Pfam	PF02365	9.8E-13	28	106	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MGRDTLALTP AAVKPPSNTA AAGTALAPGF RFHPTDEELV SYYLKRKVLN KPVRFNAIGE 60 VDIYKHEPWE LADYSRLKTR DQEWYFFIAL DKKYGNGARM NRATGQRLLE GNRQGQGNPS 120 GFPADWDEED PCFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-21	20	106	9	93	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269\|PubMed:24045019, ECO:0000269\|PubMed:25578968, ECO:0000269\|PubMed:26617990}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_53.164

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021897911.1	1e-70	LOW QUALITY PROTEIN: NAC domain-containing protein 78-like
Swissprot	Q9SQX9	3e-52	NAC50_ARATH; NAC domain containing protein 50
TrEMBL	A0A178VJ71	7e-50	A0A178VJ71_ARATH; NAC050
TrEMBL	A0A178VL85	7e-50	A0A178VL85_ARATH; NAC050
STRING	evm.model.supercontig_53.164	2e-96	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1780	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.1	1e-54	NAC domain containing protein 50

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_53.164

Publications ? help Back to Top
Zhang S, et al. C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association. Cell Discov, 2019. [PMID:26617990]