PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_53.26
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 209aa    MW: 22829.2 Da    PI: 7.0962
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_53.26genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.7e-41521511100
                       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                                  +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe +r+da+ss+vyeA ar+rdPvyG++g i +
  evm.model.supercontig_53.26  52 PCAACKILRRRCVDKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQEIPECQRTDAVSSMVYEASARIRDPVYGCAGAICQ 133
                                  7********************************************************************************* PP

                       DUF260  83 lqqqleqlkaelallkee 100
                                  lq+q+++l+ +la++++e
  evm.model.supercontig_53.26 134 LQKQVSELQGQLAKAQAE 151
                                  **************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.78451152IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4152149IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLPPTNFSYS PSSSSSPPHQ SSLISFPSPS KSSPTLPPAP PSSPPPPVVL SPCAACKILR  60
RRCVDKCVLA PYFPPTEPYK FTIAHRVFGA SNIIKFLQEI PECQRTDAVS SMVYEASARI  120
RDPVYGCAGA ICQLQKQVSE LQGQLAKAQA ELVTMQCQQA NLVALICMEM RSQSQEPIFQ  180
QQQQSTYIDT TCFLDDATLG STWEPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-43421591118LOB family transfactor Ramosa2.1
5ly0_B2e-43421591118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_53.26
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897879.11e-150LOB domain-containing protein 1-like
SwissprotQ9LQR04e-73LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB9HLY21e-101B9HLY2_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_53.261e-149(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-68LOB domain-containing protein 1