PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_53.3

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bZIP

Protein Properties

Length: 191aa MW: 21855.4 Da PI: 7.0092

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_53.3	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.2	1.1e-15	75	124	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r+rr+++NRe+ArrsR RK++ ++eL v L +eN+ L+++l++ ++ evm.model.supercontig_53.3 75 RRQRRMISNRESARRSRMRKQKHLDELWSQVVRLRNENHGLIDRLNHVSE 124 79*****************************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-16	71	135	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.576	73	124	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.95E-13	75	126	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.2E-13	75	148	No hit	No description
Pfam	PF00170	3.3E-13	75	123	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.90E-18	76	127	No hit	No description
PROSITE pattern	PS00036	0	78	93	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MLQGEITEMN YCLQPENYPV QIPSSNNNHN LSMIQPALQF NSNLFGIPQS SSCLSSNNST 60 SDEAEEHQRS IIDERRQRRM ISNRESARRS RMRKQKHLDE LWSQVVRLRN ENHGLIDRLN 120 HVSECHHRVV QENAKLKEEA ADLRRMLTDL QISSPYTAVL RAGLDDQITC NTAHLRAEST 180 ISNASIDLLH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	94	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_53.3

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021897896.1	1e-138	basic leucine zipper 43-like
Swissprot	Q9FMC2	2e-39	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A2I4DMQ6	2e-69	A0A2I4DMQ6_JUGRE; basic leucine zipper 43-like
STRING	evm.model.supercontig_53.3	1e-138	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3112	26	67
Representative plant	OGRP3104	11	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G30530.1	2e-43	basic leucine-zipper 42

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_53.3

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]