PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.150
Common Namehsf
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 279aa    MW: 30614.1 Da    PI: 6.3017
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.150genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.39e-37101012102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+ ++++isws++gn+f+v+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  evm.model.supercontig_55.150  10 FLTKTYQLVDDPITDDVISWSDTGNTFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFA 81 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   +++F++g+kell++i+r+k+
  evm.model.supercontig_55.150  82 NEYFRRGQKELLSEIRRRKT 101
                                   *****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.6E-62699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.16E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-38799IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAQRSVPAPF LTKTYQLVDD PITDDVISWS DTGNTFIVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANEYFRRGQK ELLSEIRRRK TFSPSPTPAG GNNAGAGLIS  120
PSNSGEDLGS SSTSSPDSKN PGSVETAGTP QFADLSDENE KLKRDNQMLS SELAHAKKQC  180
DELIAFLTEY VKVGPDQINR IMRQGNCGSI FDGPGGVAPG GDDGDGEGEG LKLFGVWVKG  240
EKRKRDDDEN MGFSGTQLKG TKKVQFHTPV LKSSRVCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-28510125131Heat shock factor protein 1
5d5v_B2e-28510125131Heat shock factor protein 1
5d5v_D2e-28510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_55.150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5067660.0AB506766.1 Carica papaya hsf mRNA for heat stress transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897575.10.0heat shock factor protein HSF24
SwissprotP223351e-113HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLD4QAU80.0D4QAU8_CARPA; Heat stress transcription factor
STRINGevm.model.supercontig_55.1500.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61012546
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-90heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]