PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.51
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 220aa    MW: 24539.7 Da    PI: 11.0672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.51genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.31.5e-1455101354
                                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                  ++h+e+ErrRR riNs f+ Lr++lP++     +K++Ka++L +A++ + +L
  evm.model.supercontig_55.51  55 KKHSEAERRRRFRINSQFAALRTILPNL-----TKMDKASVLGEAIQQVTQL 101
                                  68*************************9.....9************977776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.86652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-1155106No hitNo description
PfamPF000103.4E-1255101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1556110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1556111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1358107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550219.61E-5138205No hitNo description
Gene3DG3DSA:3.30.70.2609.7E-5139205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MRQSASHYPP RTYTMRSSLF HGRVSNNAKQ CSFLNGILST KPAISKAEAL AIAAKKHSEA  60
ERRRRFRINS QFAALRTILP NLTKMDKASV LGEAIQQVTQ LKKTVKELEL DSCGKSKRLF  120
PCEQDSLNLK YCNKEKTLVK IAFSCEDRLA LISNITEALK STKGKILRAE MVIVGGRARH  180
VLWIQGFLGN EGIVRLKRML RAIMDSPSSP GNSKHRVSN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16065ERRRRF
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_55.51
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897442.11e-149transcription factor bHLH131
TrEMBLA0A067FBL55e-61A0A067FBL5_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_55.511e-161(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Representative plantOGRP1491034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-41bHLH family protein