PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_55.54
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ZF-HD
Protein Properties Length: 233aa    MW: 25527.6 Da    PI: 7.5889
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_55.54genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.43.5e-3349103358
                  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                                  k rY+eClkNhA+ +GghavDGCgEfmp+ g eg+ +alkCaAC+CHRnFHR+e+e
  evm.model.supercontig_55.54  49 KPRYRECLKNHAVGIGGHAVDGCGEFMPA-GVEGSLDALKCAACNCHRNFHRKETE 103
                                  679*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2251103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-3051101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.6E-2951102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.17252101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.2E-32160231IPR009057Homeodomain-like
SuperFamilySSF466895.15E-20161230IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-25169225IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEFEDQDEQD EEMGMGTGYE SLGNSTRVKL GGPEAVGTVT GTAHQQNRKP RYRECLKNHA  60
VGIGGHAVDG CGEFMPAGVE GSLDALKCAA CNCHRNFHRK ETEPPSSSAG ELYHPASPPG  120
DAAVRSLLPG TIGRPLALPS TSGGQSRERE FDQEDMSNPM SLGGSGSSRK RFRTKFTQEQ  180
KERMLALAER LGWRIQKHDE EVVQQFCNET GVKRHVLKVW MHNNKHTLGK KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-281702271875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_55.54
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386301e-146AC238630.1 Carica papaya BAC clone 85B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897413.11e-144LOW QUALITY PROTEIN: zinc-finger homeodomain protein 2-like
SwissprotQ6YXH52e-71ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A0D2MJ391e-100A0A0D2MJ39_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NP281e-101A0A1U8NP28_GOSHI; zinc-finger homeodomain protein 2-like isoform X2
STRINGevm.model.supercontig_55.541e-174(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45052454
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-71homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]