PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_57.71
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 331aa    MW: 37495.8 Da    PI: 8.8172
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_57.71genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.3e-3234138199
                                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                  f+kv tpsdv+k++rlv+pk++ae++     +++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD
  evm.model.supercontig_57.71  34 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldASSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGD 115
                                  89****************************66667899******************************************** PP

                                  EEEEEE-.SS.SEE..EEEEE-S CS
                           B3  79 fvvFkld.gr.sefelvvkvfrk 99 
                                  +v F++  g+  + +l++ ++r+
  evm.model.supercontig_57.71 116 IVSFQRGvGElGKDRLYIDWRRR 138
                                  *****666999999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4226149IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-3031122IPR015300DNA-binding pseudobarrel domain
CDDcd100172.77E-2632121No hitNo description
SMARTSM010194.5E-2334139IPR003340B3 DNA binding domain
PROSITE profilePS5086314.74834139IPR003340B3 DNA binding domain
PfamPF023621.5E-2934138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDLSLASHEE SAGASGGAGT STDIHHAIEK EHMFDKVVTP SDVGKLNRLV IPKQHAEKYF  60
PLDASSNEKG LLLNFEDRNG KPWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ  120
RGVGELGKDR LYIDWRRRPD AADPTSLAHN QFQNPLSFPQ IFRWGRLYSM TPQSHLPLRP  180
NYDHLQRLNY GIYPYHHHHH HHHHHQHDQS QYQQQQQQQQ IVGYGNIRPS EPHQIAGLPH  240
MVFDSVPVVH GSKTAGKRLR LFGVNMECPQ EDDQSSITMP RGSLGSALSS HTPSSSLPSP  300
QFRLPPTGSA PFSTDYSDKG KSSLSFDLEL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-66291423117B3 domain-containing transcription factor NGA1
5os9_B1e-66291423117B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_57.71
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897273.10.0B3 domain-containing transcription factor NGA1
SwissprotO827992e-80NGA1_ARATH; B3 domain-containing transcription factor NGA1
SwissprotQ9MAN18e-80NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A061DTX91e-127A0A061DTX9_THECC; AP2/B3-like transcriptional factor family protein, putative
STRINGevm.model.supercontig_57.710.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-76B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]