PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_58.45
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 256aa    MW: 29421.5 Da    PI: 9.139
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_58.45genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68e-0777123455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   h  +Er RR++ +++++ L  llP       +K++K +i++ A + I +Lq
  evm.model.supercontig_58.45  77 RHMLNERIRREKQKQSYFALHALLPRG-----TKNDKNSIVQTASKSILELQ 123
                                  68899********************97.....79999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1069135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.50E-771127No hitNo description
PROSITE profilePS5088810.72873122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-777137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-477123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-479128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDGLLQDLLK LQAETSFHSP FMNRTAFLPY TNISSSSYSS LVHCPSMNKK MIDFLRSNWH  60
LNMNLKTQNP DRERCYRHML NERIRREKQK QSYFALHALL PRGTKNDKNS IVQTASKSIL  120
ELQRFREELK KRKSEFEGNL VVGNKTENTG ETQIKIKVGN PTSGVDSMLQ VLKCLNNMNS  180
KLTTIQANFS PHQLSAVINI ETQMIAGDVE KAVHTTLHEV EAKHQFQFPE DHHHHHPPCY  240
IMESADTELN IYRSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_58.45
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897134.10.0transcription factor bHLH92
STRINGevm.model.supercontig_58.450.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Representative plantOGRP97631112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.18e-50bHLH family protein