PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_59.23
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 252aa    MW: 29471.3 Da    PI: 9.3942
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_59.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.3e-191764148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+WT+eEd ll+d+v+++G g+W+++ar  g++R +k+c++rw +yl
  evm.model.supercontig_59.23 17 KGPWTAEEDRLLIDYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64
                                 79********************************************97 PP
2Myb_DNA-binding52.41.2e-1670114147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  evm.model.supercontig_59.23  70 RGQITPHEENIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                                  7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8061268IPR017930Myb domain
SuperFamilySSF466891.5E-3014111IPR009057Homeodomain-like
SMARTSM007177.2E-171666IPR001005SANT/Myb domain
PfamPF002498.7E-181764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-241871IPR009057Homeodomain-like
CDDcd001672.34E-121964No hitNo description
PROSITE profilePS5129419.52169119IPR017930Myb domain
SMARTSM007177.5E-1569117IPR001005SANT/Myb domain
PfamPF002494.9E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2472118IPR009057Homeodomain-like
CDDcd001671.90E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSWGVMGWGV IEEGWRKGPW TAEEDRLLID YVRLHGEGRW NSVARLAGLK RNGKSCRLRW  60
VNYLRPDLKR GQITPHEENI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKTK  120
GSPDNSSKVN KRMLKRQQFH HQQQQLQHQQ QHCLQDNQVE MKKMVPLLDE NEQKVPYFPQ  180
MTTSFYSHTT PVDQQEQGFN YLNPTTVVNG SVCEVNNDDL LWDGLWNLDD VHVNFGGAPK  240
PTFHNLVTPF C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_59.23
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897000.10.0myb-related protein 305
TrEMBLA0A061EPG81e-110A0A061EPG8_THECC; Myb domain protein 79 isoform 1
STRINGevm.model.supercontig_59.230.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31072766
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-82myb domain protein 305