PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.124
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 185aa    MW: 20588.1 Da    PI: 10.0882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.124genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08114160347
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                                  +WT+   +l+ +a + + ++   +W  +a+ +g g++++++k ++ k+
  evm.model.supercontig_6.124 114 SWTPKQNKLFERALAVYDKDtpdRWINVAKAVG-GKSAEEVKKHYEKL 160
                                  7********************************.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.482110165IPR017884SANT domain
SMARTSM007171.8E-7111163IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-12113168IPR009057Homeodomain-like
PfamPF002491.4E-6114160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-4114162IPR009057Homeodomain-like
CDDcd001671.94E-6115161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSLERGLNSL SGIYSKSHGS GPHASERINN SYFSCSNLIH RFHLQKLTGL GKNNPKRLII  60
DIKMRRCSNK QGHANVDYEN ENNQLYLEIF QSKGTAATLM ASNSLTSSRS SSSSWTPKQN  120
KLFERALAVY DKDTPDRWIN VAKAVGGKSA EEVKKHYEKL IRDVKDIESG RYPYPSYGSS  180
GNGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-31105184180RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_6.1241e-134(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-25RAD-like 6