PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_6.173

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

bHLH

Protein Properties

Length: 404aa MW: 45075.9 Da PI: 8.4483

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_6.173	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.00028	300	337	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L +l+ + +K + a++L++A+ YI+ L evm.model.supercontig_6.173 300 RKEKLGDRIAALHKLVAPF-----GKTDTASVLTEAIGYIQFL 337 6678889999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.363	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.44E-4	298	342	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-7	298	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-10	298	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MESAANIHFQ FQLQEQLARY YSMATRSTAS HKVSVPSHDW HPSTGFLNND SNNMNYHRET 60 ISSSSSGSEP WAPSHHHQQS LLANHMKEEI SDYNSFLKLL MTEINAEDSL SQNLISLDRN 120 FSSTHHHQQL PELSGADHHH QSLQANNYNS YNDYMNYLRN NIDHVSTPTS RSLLYSSSNY 180 ANNSFVLRSE LSSTYDHDND DTGRNSSRQL SSSFAQRNLG GLNIRSGETS AIFMKSERDG 240 SSITPSKRSC TKLKMSALES GSGRTKTPSI FTASGSMESQ EKAKKYKTMP RSSCPPLKVR 300 KEKLGDRIAA LHKLVAPFGK TDTASVLTEA IGYIQFLHDQ IQTLSVPYRK SSYKSGTRSF 360 ILASSSKEED EKEGEKAELR SRGLCLVPLS CVSFLNLYNC SGL*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MESAANIHFQ FQLQEQLARY YSMATRSTAS HKVSVPSHDW HPSTGFLNND SNNMNYHRET  60
ISSSSSGSEP WAPSHHHQQS LLANHMKEEI SDYNSFLKLL MTEINAEDSL SQNLISLDRN  120
FSSTHHHQQL PELSGADHHH QSLQANNYNS YNDYMNYLRN NIDHVSTPTS RSLLYSSSNY  180
ANNSFVLRSE LSSTYDHDND DTGRNSSRQL SSSFAQRNLG GLNIRSGETS AIFMKSERDG  240
SSITPSKRSC TKLKMSALES GSGRTKTPSI FTASGSMESQ EKAKKYKTMP RSSCPPLKVR  300
KEKLGDRIAA LHKLVAPFGK TDTASVLTEA IGYIQFLHDQ IQTLSVPYRK SSYKSGTRSF  360
ILASSSKEED EKEGEKAELR SRGLCLVPLS CVSFLNLYNC SGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_6.173

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908294.1	3e-88	transcription factor bHLH110-like
STRING	evm.model.supercontig_6.173	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1342	13	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	6e-36	bHLH family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_6.173