PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.219
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family DBB
Protein Properties Length: 104aa    MW: 11361.2 Da    PI: 6.4729
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.219genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.26.8e-08433534
                     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                                  C+ +e+  ++ fC  ++  lC+ C ++ H
  evm.model.supercontig_6.219  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                                 7**************************998 PP
2zf-B_box28.33.6e-095291237
                     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  evm.model.supercontig_6.219 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                                 6799**************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
CDDcd000215.73E-5345No hitNo description
PfamPF006432.3E-6342IPR000315B-box-type zinc finger
SuperFamilySSF578459.16E-55086No hitNo description
SMARTSM003369.9E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501198.9025196IPR000315B-box-type zinc finger
PfamPF006435.9E-75291IPR000315B-box-type zinc finger
CDDcd000211.75E-55484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP NDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VEV*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.219
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908309.12e-69B-box zinc finger protein 19-like
RefseqXP_022775398.14e-69B-box zinc finger protein 18-like isoform X1
SwissprotC0SVM51e-63BBX19_ARATH; B-box zinc finger protein 19
TrEMBLD7U5G97e-67D7U5G9_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_6.2191e-69(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21682469
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-66DBB family protein