PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.280
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 232aa    MW: 26382.1 Da    PI: 9.8315
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.280genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.7e-151461148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g+W+ eEde+l+ +++  G g+W++ ++  g+ R++k+c++rw +yl
  evm.model.supercontig_6.280 14 KGAWSREEDERLIAYIQANGQGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                                 79******************************99************97 PP
2Myb_DNA-binding58.71.3e-1867111147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  rg++T+eE+el+++++++lG++ W+ Ia +++ gRt++++k++w+++
  evm.model.supercontig_6.280  67 RGNFTPEEEELIIKLHRLLGNK-WSIIAGRLP-GRTDNEIKNYWNTH 111
                                  89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.245961IPR017930Myb domain
SuperFamilySSF466891.65E-2813108IPR009057Homeodomain-like
SMARTSM007177.0E-121363IPR001005SANT/Myb domain
PfamPF002491.0E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-221568IPR009057Homeodomain-like
CDDcd001672.78E-81661No hitNo description
PROSITE profilePS5129428.74362116IPR017930Myb domain
SMARTSM007172.1E-1766114IPR001005SANT/Myb domain
PfamPF002497.6E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-2869116IPR009057Homeodomain-like
CDDcd001673.35E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRSPCCEKG HPNKGAWSRE EDERLIAYIQ ANGQGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TPEEEELIIK LHRLLGNKWS IIAGRLPGRT DNEIKNYWNT HIRRKLLTRG  120
VDPSTHQPIN KAGNLRRTKQ GDEEAEEKII CNGGFGIQNQ KNTDREKCHQ ELNLELRISL  180
PTNPVVTQPF EKRGRQKVLC FYCSLGLPNN KECSCSSSEG GRNGALDYRK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-281311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.280
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908231.11e-170myb-related protein 308-like
SwissprotP813932e-93MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2K2AF671e-108A0A2K2AF67_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_6.2801e-169(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-92myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]