PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.32
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 246aa    MW: 26928.7 Da    PI: 7.0375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.32genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002189111123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ykC+ C+k Fs+   L  H  +H
  evm.model.supercontig_6.32  89 YKCKVCNKAFSSYQALGGHKTSH 111
                                 9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.008889111IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.55E-989111No hitNo description
PfamPF139121.7E-1289113IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.78389116IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576674.55E-9147174No hitNo description
PROSITE profilePS501578.954152174IPR007087Zinc finger, C2H2
SMARTSM003550.51152174IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-13152176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MALEMLNSPT SAPPLLRHDH DFEELQYYLH EPWAKRKRTK RPRLENPPTE DEYFAICLLM  60
LAQGTTTTST TTTADDRYNS HAAPPSPSYK CKVCNKAFSS YQALGGHKTS HRSKLTGADH  120
DQSSTNNPAT DISTGYGGVF KTTTFNQSGK IHTCSICYKT FPSGQALGGH KRCHYDATGN  180
QAGGGDFDGD GSCGDDNYNQ VLLEGGTIKF PSSTSQRDFD LNLPAPGFSP PYLLTDQDRK  240
GQRFE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.32
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908197.10.0zinc finger protein AZF1
TrEMBLA0A061DHM66e-65A0A061DHM6_THECC; Zinc-finger DNA binding protein, putative
STRINGevm.model.supercontig_6.320.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-47zinc-finger protein 1