PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_6.368

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

WOX

Protein Properties

Length: 232aa MW: 26230.3 Da PI: 5.3651

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_6.368	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3.1e-21	102	162	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ evm.model.supercontig_6.368 102 RQRWTPTPIQLQILERIFDQgNGTPSKQKIKDITSELsqhgQISETNVYNWFQNRRARSKR 162 89***************99************************************97 PP
2	Wus_type_Homeobox	101.7	5.2e-33	101	164	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq evm.model.supercontig_6.368 101 ARQRWTPTPIQLQILERIFDQGNGTPSKQKIKDITSELSQHGQISETNVYNWFQNRRARSKRKQ 164 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.5E-18	95	167	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.094	98	163	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.14E-18	99	164	IPR009057	Homeodomain-like
SMART	SM00389	3.1E-14	100	167	IPR001356	Homeobox domain
Pfam	PF00046	4.7E-19	102	162	IPR001356	Homeobox domain
CDD	cd00086	9.28E-14	102	164	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEWDNQPPQQ QQQQENQANQ RDCLGVNMNA NVNGNGVMYV KVMTDEQLET LRKQIAMYAS 60 ICEQLVEMHK NLTAQQDLAG GRLGNLYCDP LMTSGGHKMT ARQRWTPTPI QLQILERIFD 120 QGNGTPSKQK IKDITSELSQ HGQISETNVY NWFQNRRARS KRKQLVAPSN NAESEVETEV 180 ESPNEKKTKP EDLHSQLNSG PRAEDLCFQS PEITSELHFL GALTNPSEYT I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	163	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_6.368

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908310.1	1e-170	WUSCHEL-related homeobox 13
Swissprot	O81788	1e-98	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A0D2M0X0	1e-128	A0A0D2M0X0_GOSRA; Uncharacterized protein
TrEMBL	A0A0D2NBV1	1e-129	A0A0D2NBV1_GOSRA; Uncharacterized protein
STRING	evm.model.supercontig_6.368	1e-174	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51
Representative plant	OGRP1873	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-96	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_6.368

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]