PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_6.395

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 204aa MW: 22759.6 Da PI: 10.0923

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_6.395	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.4	1.2e-38	3	100	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 aCaaC++++rkC+++Cvlapyfpa++++kf +++k+FG+s+v+k+l++l+ ++re+a++s+vyeAear+rdPv+G++g+++k evm.model.supercontig_6.395 3 ACAACRFHKRKCEEECVLAPYFPADERQKFDCINKVFGTSRVTKILNRLDASQREAAVKSIVYEAEARLRDPVRGCAGLVSK 84 7******************************************************************************* PP DUF260 83 lqqqleqlkaelallk 98 l ++l+ ++ael ++ evm.model.supercontig_6.395 85 LLNRLQLVEAELLNAR 100 ********997665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	2	103	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-36	3	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSACAACRFH KRKCEEECVL APYFPADERQ KFDCINKVFG TSRVTKILNR LDASQREAAV 60 KSIVYEAEAR LRDPVRGCAG LVSKLLNRLQ LVEAELLNAR RLLDTVIAPQ AILPMQQPLG 120 MGSSIHYNIV PIMGNPPVHS HTGGQLLVFG AYIERLRVVN VAVHHHEKAP QGYPSRPSYY 180 RGALKRKTFA LIVDNRGRIF VIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-30	2	96	10	104	LOB family transfactor Ramosa2.1
5ly0_B	7e-30	2	96	10	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_6.395

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908382.1	1e-104	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	1e-43	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2P6RN88	2e-45	A0A2P6RN88_ROSCH; Putative transcription factor AS2-LOB family
TrEMBL	A0A2R6R6B4	2e-45	A0A2R6R6B4_ACTCH; LOB domain-containing protein
STRING	evm.model.supercontig_6.395	1e-149	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-46	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_6.395

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]