PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_6.40
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 240aa    MW: 25789.3 Da    PI: 8.2627
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_6.40genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-312103197
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg
  evm.model.supercontig_6.40   2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLFEACGRTVNPVNGAVG 84 
                                 6********************************************************************************** PP

                      DUF260  79 vilklqqqleqlkaelall 97 
                                 ++++++++++q+++e++l+
  evm.model.supercontig_6.40  85 LLWTGNWHICQAAVETVLR 103
                                 *************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.8821107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHICQAAVET VLRGGTLRPV PELLSGGSGG  120
LSPLADEASE SCTDMWMLRS STNQNPTCRF SNSRSKVSPT KRKRSPEEPK KLPLQLSDLD  180
LGLTSSFPAN SAAYKPETRR PGTPSMNSEE SVTTSCWDSG LGDQYANGGG QTRLLNLFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_6.40
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021908003.11e-176LOB domain-containing protein 38-like
SwissprotQ9SN238e-96LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9SGY61e-124B9SGY6_RICCO; LOB domain-containing protein, putative
STRINGevm.model.supercontig_6.401e-175(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.14e-89LOB domain-containing protein 39