PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_6.72

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

M-type_MADS

Protein Properties

Length: 98aa MW: 11080.8 Da PI: 9.9642

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_6.72	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.6	9.2e-20	12	55	4	47
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 +nk n+++tfs R+n + KKA+ELS+LC+++ a+i f +tgkl evm.model.supercontig_6.72 12 KNKANKSITFSHRKNSLVKKAYELSTLCEIDLALIFFTPTGKLS 55 79****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.1E-17	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.82	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.37E-22	2	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-14	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-17	12	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-14	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-14	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MGRPKTKLGE GKNKANKSIT FSHRKNSLVK KAYELSTLCE IDLALIFFTP TGKLSLFDGK 60 SSVEETLERY LNLPPPCRER YAVHFEGGEM RLNYIKQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_6.72

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021908260.1	4e-51	serum factor response D-like
Swissprot	Q9LM46	1e-22	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A022QCZ8	2e-24	A0A022QCZ8_ERYGU; Uncharacterized protein
STRING	evm.model.supercontig_6.72	6e-66	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77950.2	4e-26	AGAMOUS-like 67

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_6.72

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]