PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_61.16
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 472aa    MW: 53963.9 Da    PI: 6.9273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_61.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08302330536
                                  HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS CS
                          HLH   5 hnerErrRRdriNsafeeLrellPk.askapsk 36 
                                  h + Er+RR+++N++f+ Lr+ll + +s    +
  evm.model.supercontig_61.16 302 HMISERKRREKLNESFQALRSLLLQePS----T 330
                                  8899*********************443....2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-9295357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.264297355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.13E-5299324No hitNo description
Gene3DG3DSA:4.10.280.104.5E-6300327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-6302330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-4303343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MDDTFLLDEL TRRHFFRTLM NSFGCTYFCL WSYVPRTNCL IPLDGYFNEE NEQASTSSGS  60
LARNLFSEYR QSIINLENDS HVPGLAFRNN HPFIELRGAE IKRRAQSGTQ RQFYQINMEM  120
GMRELFPDDF LRQFPLGEFP HPTSQEQKSS SSSTLRSLDS PSEYSPFTFN IQRPSLDIPP  180
LQALTTTTME TLSRIPNIHL PNRENEEDAI TRAILAVLTS PCSSTSSSTQ QNQNLPYHKH  240
GLLNRKTGAF KRYNTSPKSQ MIGASSRRPS MIKRAISYYQ RLNILAREHI LANRPTTTQL  300
HHMISERKRR EKLNESFQAL RSLLLQEPST REHITSLKGE IAELMKKNQE LEAQLLHGKE  360
SKGDHEDDIE GNVSERVNVR VVNASESTSQ DRVMELRVIV RGECGIDEVV ISLLEFLKQL  420
NNVSLISMEA RTLVAEQTSF AHANFTLKIE GEWDEAVFQE AVRRVVADLP H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310ERKRRE
2306311RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_61.16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896800.10.0putative transcription factor bHLH041
TrEMBLA0A061GTG01e-118A0A061GTG0_THECC; Basic helix-loop-helix DNA-binding family protein, putative
STRINGevm.model.supercontig_61.160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-81bHLH family protein