PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_61.31

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 217aa MW: 24316.6 Da PI: 5.9838

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_61.31	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	77.4	2.5e-24	1	84	18	101
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +apyfp ++ ++f+n++klFG sn+++l+++l+ ++r++a++sl++e+++r +dPv+G++gv+ +l+ ++e ++elal+++ evm.model.supercontig_61.31 1 MAPYFPISRFSEFQNAQKLFGISNIHRLIHSLESSKRQEAADSLLMEGNMRCNDPVHGCLGVVCELKAKIELFEKELALVNQ 82 59******************************************************************************99 PP DUF260 100 el 101 +l evm.model.supercontig_61.31 83 QL 84 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.408	1	84	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-21	1	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAPYFPISRF SEFQNAQKLF GISNIHRLIH SLESSKRQEA ADSLLMEGNM RCNDPVHGCL 60 GVVCELKAKI ELFEKELALV NQQLHHFRSQ RDDEQMQQVK GKLVDDELPP ILTLSSLTPQ 120 SDTLDMPPPF LVEHNSDDLE IFHNGYKDPL PTGKELGLEF QGVGNLHHNY PAKLLSYRTG 180 ESSSAAILYN EKLKQEVKDV VSAVPISKKG KEHIEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-14	1	87	28	114	LOB family transfactor Ramosa2.1
5ly0_B	9e-14	1	87	28	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_61.31

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475549.1	3e-37	LOB domain-containing protein 22-like
STRING	evm.model.supercontig_61.31	1e-159	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-20	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_61.31