PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_62.23

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

Protein Properties

Length: 283aa MW: 32954.6 Da PI: 9.7769

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_62.23	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.9	1.6e-17	134	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 f+k +++s+v+ +l lp +f+++h ++ + t+tl +e+ +++ k+ +k++ l++GW++F+ +++L +gD + evm.model.supercontig_62.23 134 FVKPMLQSHVTGGFWLGLPVQFCKTHlpKY----DETITLVNEEQEEFPTKYLADKTG----LSAGWRGFAIDHQLVDGDAL 207 89**********************5433....459***********666666....**************** PP EEEE-SSSEE..EEEEE-S CS B3 81 vFkldgrsefelvvkvfrk 99 vF+l++ +ef +v ++r+ evm.model.supercontig_62.23 208 VFQLVSPTEF--KVYIIRA 224 *9876666..9999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.6E-21	128	225	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.92E-24	128	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.12E-24	132	223	No hit	No description
Pfam	PF02362	1.5E-15	134	224	IPR003340	B3 DNA binding domain
SMART	SM01019	5.6E-22	134	225	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.083	134	225	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MVEAKLSYEQ IRLKRLEENK KRMEELNLNK LSKALRKSAK PSPVELRYEQ AKQVKPRAAR 60 LPADLTPLRR SNRVADKPPP NYKDEPVEPL RGVRRSYQRR DLLNRVYASD KARLYAIERA 120 EQVRSGLEPE FPSFVKPMLQ SHVTGGFWLG LPVQFCKTHL PKYDETITLV NEEQEEFPTK 180 YLADKTGLSA GWRGFAIDHQ LVDGDALVFQ LVSPTEFKVY IIRANESDSE DYKDDERDPE 240 TTHSNRRSKR IKTEVINLLV KYSTNKENLG TFSYCKKDWF WF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_62.23

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896689.1	1e-178	B3 domain-containing protein At3g19184-like
Refseq	XP_021896690.1	1e-178	B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	2e-93	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A061E0U4	1e-109	A0A061E0U4_THECC; AP2/B3-like transcriptional factor family protein, putative
TrEMBL	B9HRZ6	1e-109	B9HRZ6_POPTR; Uncharacterized protein
STRING	evm.model.supercontig_62.23	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59
Representative plant	OGRP995	16	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	9e-96	B3 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_62.23

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]