PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_62.25
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 487aa    MW: 54744.6 Da    PI: 9.0881
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_62.25genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.98.7e-19155244198
                                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                  f+k+l++s+v++  ++ lp +f++ h   ++ ++t+tle+e+g+++++ +i ++    + l++GWk+F +a++L egD++vF
  evm.model.supercontig_62.25 155 FIKTLVRSNVNSVFWMHLPIQFCKLHL--PRHDVTVTLENENGKEYKISFIAER----TALSAGWKKFSDAHELLEGDVLVF 230
                                  89*********************8884..45789****************4444....45********************** PP

                                  EE-SSSEE..EEEEE- CS
                           B3  83 kldgrsefelvvkvfr 98 
                                  +l+++++f  +v v+r
  evm.model.supercontig_62.25 231 QLISSTKF--KVYVVR 244
                                  **997777..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-22147246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-24150247IPR015300DNA-binding pseudobarrel domain
CDDcd100177.49E-25153244No hitNo description
PfamPF023621.2E-16155244IPR003340B3 DNA binding domain
PROSITE profilePS5086314.494155246IPR003340B3 DNA binding domain
SMARTSM010193.6E-19155246IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKKQKSRQVR DMNDKYALRL RLASSSSSKK VNLDVIRQGK PLEAKMNQTQ IPDKPIKPGN  60
DAKQFVICIG GHSVMDEGKN ESKFSLGCLH VHMGYLERQV IFTLMPEPGS DLLLECCKHK  120
RAVVDEAYGL VQAKSPTVEQ AEKVQASLSS RFPSFIKTLV RSNVNSVFWM HLPIQFCKLH  180
LPRHDVTVTL ENENGKEYKI SFIAERTALS AGWKKFSDAH ELLEGDVLVF QLISSTKFKV  240
YVVRAKNAKK VDGELPLIDL DTRLIDSETN SKSTKRPKHV KILPLLPPPD NVQNNSLKEL  300
ADHATATNKS ENNHKNLGSK NPVATSSSGP IDGTKNIGSI DSFTILLNGT SIDSDISSHH  360
KTKYYELCCS QNSLLHEDLL KSINHKLAAE IITQTVNIAE AITASKLWTS ESDYDLWDKT  420
LKDPDSQSYR EISLQQGRVK EEMRSTQLRL LKLQETLRKL NDEIEVLSAS SKRLMLRFEE  480
EVNAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_62.25
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896763.10.0B3 domain-containing protein At3g19184-like isoform X3
TrEMBLA0A061DZV91e-112A0A061DZV9_THECC; AP2/B3-like transcriptional factor family protein, putative isoform 1
TrEMBLA0A2C9VJP01e-112A0A2C9VJP0_MANES; Uncharacterized protein
STRINGevm.model.supercontig_62.250.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167171012
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-33B3 family protein