PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_62.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 257aa    MW: 27442.6 Da    PI: 8.8632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_62.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-192473255
                          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a+++a+++l+g
  evm.model.supercontig_62.63 24 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDNAARALRG 73
                                 689******.7*********....4456*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-202481IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.6E-292481IPR001471AP2/ERF domain
PfamPF008472.3E-132473IPR001471AP2/ERF domain
SMARTSM003801.1E-352487IPR001471AP2/ERF domain
CDDcd000188.24E-292481No hitNo description
PROSITE profilePS5103220.6532481IPR001471AP2/ERF domain
PRINTSPR003673.7E-82536IPR001471AP2/ERF domain
PRINTSPR003673.7E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAAPTTDVAG KKKKKKASSR GHNRFVGVRQ RPSGRWVAEI KDSLQKVRLW LGTFDTAEEA  60
ARAYDNAARA LRGVNARTNF ESPPQSAPTA KQNGSTLAGR LAVEKMEPFS FEAVCGGSAS  120
DGFLGALKAK LLDGKGSRVR ALLAASFQFP PLFSPPPNPT DPVVDRTGFG QWHDPPPQAA  180
PAKTSVIWSN EQLVDWGTNG ASTQMNYHGS DQNNCSFAST WPASVSEIRG VWPLDQPQFV  240
GCDEEDGVWG TGGDAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1522801271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_62.63
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896631.10.0ethylene-responsive transcription factor 11-like
TrEMBLA0A061G1T01e-49A0A061G1T0_THECC; AP2/ERF domain-containing transcription factor, putative
STRINGevm.model.supercontig_62.630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-18related to AP2 11