PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_64.15
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 223aa    MW: 26119.3 Da    PI: 5.8734
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_64.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.8e-20331071393
                                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                  +++l +pk+f  ++++ ++ +  ++l+ +sg +W+v+l  + k+++ ++++GW+eFvk++ Lke+D+++F++++rs f   
  evm.model.supercontig_64.15  33 RQQLEIPKRFS-QYMK-EKLPESIVLRGPSGITWNVEL--TSKDDALFFQDGWQEFVKDHSLKENDVLIFRYHERSHF--D 107
                                  56799*****8.7753.347889***************..********************************988887..3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.83E-2320112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.0321114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-2323112IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-1224114IPR003340B3 DNA binding domain
CDDcd100172.03E-2032112No hitNo description
PfamPF023624.8E-1734106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MGETSEQCRQ WENIYWSHFQ CKQFAQFLLG DFRQQLEIPK RFSQYMKEKL PESIVLRGPS  60
GITWNVELTS KDDALFFQDG WQEFVKDHSL KENDVLIFRY HERSHFDVFM FDGQNLCEKE  120
VSYFINKSAN EKPEDKSPRK SEEHCVEANH TPTHCATDCT SFDNFTTGDG EMMPVKSESY  180
GKRKRTEARS TKAAPKTRFQ QKRGLPNPEV EMELEPVLLM HE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_64.15
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896354.11e-163B3 domain-containing protein REM16-like, partial
STRINGevm.model.supercontig_64.151e-168(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Representative plantOGRP1491534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-41B3 family protein