PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_64.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 318aa    MW: 34860.9 Da    PI: 8.3788
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_64.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.27e-32137190255
                      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  evm.model.supercontig_64.19 137 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 190
                                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.51E-15134191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-28135191IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23137190IPR006447Myb domain, plants
PfamPF002492.0E-7138189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MFSTSNALTT TATPLPDLSL QICPPSLSDS DAKQMGFDGF NTKPLSSSDR SSTTADSASS  60
GSDLSQENGF FNPDSSCYKL HHGEPSLSLG FEMAPQQVQL PRPNNHHHHQ YQPQIYARDF  120
KRNARMVGGA KRSIRAPRMR WTTTLHAHFV HAVQLLGGHE RATPKSVLEL MNVKDLTLAH  180
VKSHLQMYRT VKSTDKGSGQ GQGLNQRTGI VDVDGGVSCG AAHHINPPPT SPIPTPQKTQ  240
RTSWSSSEET NDRRCISTQV NAWTHSHLKV DRDEAVLVLS DSMKDIREHR SSSFPPSNMS  300
VNLEFTLGSP SLQMDNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A4e-17138192357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-17138192357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-17138192357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-17138192357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17138192458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_64.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719893e-77KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896463.10.0probable transcription factor KAN4
TrEMBLA0A061FC761e-113A0A061FC76_THECC; Homeodomain-like superfamily protein, putative
STRINGevm.model.supercontig_64.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-63G2-like family protein