PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_65.17

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TCP

Protein Properties

Length: 159aa MW: 17432.8 Da PI: 9.4376

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_65.17	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	92.3	9.9e-29	26	91	5	70
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 k +++++h+kv+gRdRRvR++a+caar+F+L++eL f++++ ti WLl q++ +i++ tg + s+a evm.model.supercontig_65.17 26 KPKTKDRHAKVEGRDRRVRIPADCAARVFQLTRELSFKTNGDTIRWLLYQSESSIIARTGYGVSPA 91 789*********************************************************977776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-24	28	85	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	22.418	29	83	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSSNMNATNL DGADQPISKK PTGLPKPKTK DRHAKVEGRD RRVRIPADCA ARVFQLTREL 60 SFKTNGDTIR WLLYQSESSI IARTGYGVSP APPPPPPPPS PVVELFPGGS SFNPPAFQVY 120 RPVPLLPSPE FNHFMASYDL PYHFTGTHGI DMFEAAEK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_65.17

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896117.1	1e-111	transcription factor TCP19-like
Swissprot	Q9LT89	1e-25	TCP19_ARATH; Transcription factor TCP19
STRING	evm.model.supercontig_65.17	1e-113	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	1e-23	TCP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_65.17