PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_65.18

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TCP

Protein Properties

Length: 120aa MW: 12895.4 Da PI: 10.1015

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_65.18	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	54.4	4.9e-17	6	68	3	65
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 + +r ++hT v+ R+ v l+aeca r+F L+ eLG+ + ++t+eWLl+q +a +++ + evm.model.supercontig_65.18 6 TTNSRRRDRHTRVEDRGHFVTLPAECADRIFRLTGELGLQSHGQTVEWLLRQGLAARFAMPVS 68 567899**********************************************98888777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-13	10	61	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	13.986	11	65	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MSNRTTTNSR RRDRHTRVED RGHFVTLPAE CADRIFRLTG ELGLQSHGQT VEWLLRQGLA 60 ARFAMPVSFA SNQTPSGAAP AVAPATGFAP GSVDPPSSGG RSVEINNVGM MEEDGRRLF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_65.18

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896118.1	1e-81	transcription factor PCF2-like
STRING	evm.model.supercontig_65.18	3e-82	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	2e-09	TCP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_65.18