PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_65.20

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

TCP

Protein Properties

Length: 186aa MW: 19689.3 Da PI: 11.4784

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_65.20	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	80.1	5.7e-25	16	69	4	57
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakp 57 + r +++h kv+gRdRRvRl+a caar+F+L++eLG+ +d++t+eWLl+ + evm.model.supercontig_65.20 16 TQPRRKDRHLKVDGRDRRVRLPAVCAARIFQLTRELGLASDGQTVEWLLRHFQN 69 67899********************************************97653 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-20	20	67	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.42	20	74	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MPNRPTKTKP TTKRATQPRR KDRHLKVDGR DRRVRLPAVC AARIFQLTRE LGLASDGQTV 60 EWLLRHFQNT RFPSSVSSTS TQIPSGSASA TPASISFNVP AQATVSPAIG STSGSVDSPS 120 FGGLNLTMGI TRSPSVEINS REINNGGSGG SLGLLPGGDM SFTSLPTKVE EKADKGTMIF 180 GCRLF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_65.20

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021896119.1	1e-132	transcription factor TCP21-like
STRING	evm.model.supercontig_65.20	1e-131	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP922	14	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-20	TCP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_65.20