PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_65.44
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 253aa    MW: 28097 Da    PI: 7.9267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_65.44genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08140187455
                                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sLq
  evm.model.supercontig_65.44 140 SHSLAERVRREKINERLRCLQDLVPGC----YKTMGMAVMLDVIINYVQSLQ 187
                                  8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-10134191No hitNo description
SuperFamilySSF474599.03E-17134206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-16136199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.358136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-5140187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-8142192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MADQFSELEF QTFKHCFKDT LNQTVLEEVT GSTHHHLRGS SMSFSHSTFL HSQLAQPTMT  60
FTGGFGEERK NGKEAMGGVG QNLLLVNLCP PPGSATGLFT GNDSKGNSQG RKRKKKSEMD  120
LQKPKEVIHV RAKRGQATDS HSLAERVRRE KINERLRCLQ DLVPGCYKTM GMAVMLDVII  180
NYVQSLQNQI EFLSMKLSAA SMYCDFNMME MDSMETILQG ASTYGLQEME KMMKEGYGGG  240
GGSSYLNSTW SF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_65.44
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896289.11e-157transcription factor bHLH75
TrEMBLA0A067GNR65e-78A0A067GNR6_CITSI; Uncharacterized protein
STRINGevm.model.supercontig_65.440.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140812024
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.16e-53bHLH family protein