PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_66.19
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 291aa    MW: 33384.9 Da    PI: 8.2541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_66.19genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-061842123
                                 EEET..TTTEEESSHHHHHHHHHHT CS
                      zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                                 + C+  dC+ s++rk++L+rHi  H
  evm.model.supercontig_66.19 18 FICSvdDCSASYRRKDHLTRHILQH 42
                                 789999****************988 PP
2zf-C2H211.90.000694772123
                                 EEET..TTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                                 +kCp  +C+  F  +sn krH  + H
  evm.model.supercontig_66.19 47 FKCPveNCNLEFVFPSNIKRHTEKfH 72
                                 89*******************99888 PP
3zf-C2H219.33e-0690114123
                                  EEET..TTTEEESSHHHHHHHHHHT CS
                      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                                  ++C+   Cgk+F+  s+L++H  +H
  evm.model.supercontig_66.19  90 HVCQevGCGKVFKFASQLQKHADSH 114
                                  789999***************9888 PP
4zf-C2H218.55.6e-06182206223
                                  EET..TTTEEESSHHHHHHHHHH.T CS
                      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                                  kC    C+++Fs+ksnL +H +  H
  evm.model.supercontig_66.19 182 KCDfeGCHQTFSTKSNLSQHVKAvH 206
                                  688889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.1E-101444IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.43E-71444No hitNo description
PROSITE profilePS501579.6811847IPR007087Zinc finger, C2H2
SMARTSM003550.00441842IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802042IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-54573No hitNo description
Gene3DG3DSA:3.30.160.605.5E-54573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.8714777IPR007087Zinc finger, C2H2
SMARTSM003552.54772IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804972IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-786114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.35E-586115No hitNo description
SMARTSM003550.01590114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.20190119IPR007087Zinc finger, C2H2
PROSITE patternPS00028092114IPR007087Zinc finger, C2H2
SMARTSM003556.9122147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280124147IPR007087Zinc finger, C2H2
SMARTSM0035515150171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.37E-8162217No hitNo description
Gene3DG3DSA:3.30.160.604.8E-7163203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.03181211IPR007087Zinc finger, C2H2
SMARTSM003557.3E-4181206IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280183206IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4205235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.6212238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280214238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDQYQVGRPP EKLHQRPFIC SVDDCSASYR RKDHLTRHIL QHQGKLFKCP VENCNLEFVF  60
PSNIKRHTEK FHNDADNESP ASSVGGQKQH VCQEVGCGKV FKFASQLQKH ADSHVKPDSI  120
EAFCAEPGCM KYFTNEQCLR AHVQTCHQKI DCEICGSKQL RKNMKRHLRT HDGGESSSTR  180
IKCDFEGCHQ TFSTKSNLSQ HVKAVHLELK PFICSFSDCG MQFAYKHVRD NHEKTGCHLY  240
TCGDFVESDV QFRSTPRGGR KREPITVDML IRKRVMLPQL DPRMEQCDEQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A7e-111514240155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D7e-111514240155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_66.19
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0884951e-109JN088495.1 Vasconcellea monoica clone BAC-MN13O12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896070.10.0transcription factor IIIA isoform X3
RefseqXP_021896071.10.0transcription factor IIIA isoform X3
SwissprotQ84MZ41e-118TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1U8N2F11e-147A0A1U8N2F1_GOSHI; transcription factor IIIA-like isoform X2
TrEMBLA0A1U8PBC71e-147A0A1U8PBC7_GOSHI; transcription factor IIIA-like isoform X4
STRINGevm.model.supercontig_66.190.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.11e-122transcription factor IIIA