PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_66.59
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GRAS
Protein Properties Length: 172aa    MW: 19434.2 Da    PI: 7.9344
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_66.59genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1172.4e-364169225374
                         GRAS 225 devLklvkslsPkvvvvveqe.adh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                  +++L+ v+sl P +v++ve+e +++ +  sFl  f+e+l+y++a+fdsle  lp es er ++E+  lg+ei++++    ++
  evm.model.supercontig_66.59   4 SDTLRSVRSLHPSIVTLVEHEsCSRsTPRSFLSLFMESLQYFAAMFDSLEDCLPLESAERLSIEKNHLGKEIKSMLNYGDDH 85 
                                  679******************655556779**********************************************999888 PP

                         GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve....ee.............sgslv.lgWkdrpLv 368
                                      he+ e+W+ r+e+ GF+ v++s++ ++qaklll++       ++    ++             +g ++ lgW++r L+
  evm.model.supercontig_66.59  86 ---HHEKIETWKGRMESHGFSGVEVSSRSMMQAKLLLKMRTHY-CPLQfggeNNyingggfrvfgrdEGKAIsLGWQGRCLL 163
                                  ...9*********************************986522.22222222224444444444444777777********* PP

                         GRAS 369 svSaWr 374
                                  ++SaWr
  evm.model.supercontig_66.59 164 TASAWR 169
                                  *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.8991132IPR005202Transcription factor GRAS
PfamPF035148.3E-344169IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKISDTLRSV RSLHPSIVTL VEHESCSRST PRSFLSLFME SLQYFAAMFD SLEDCLPLES  60
AERLSIEKNH LGKEIKSMLN YGDDHHHEKI ETWKGRMESH GFSGVEVSSR SMMQAKLLLK  120
MRTHYCPLQF GGENNYINGG GFRVFGRDEG KAISLGWQGR CLLTASAWRC V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-186168234378Protein SCARECROW
5b3h_A1e-186168233377Protein SCARECROW
5b3h_D1e-186168233377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_66.59
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021896005.11e-125LOW QUALITY PROTEIN: scarecrow-like protein 23
TrEMBLB9MW615e-82B9MW61_POPTR; GRAS family protein
STRINGevm.model.supercontig_66.591e-125(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81961117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-24RGA-like 2