PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_660.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28103.1 Da    PI: 8.4419
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_660.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.3e-31959151
                                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs +gklye++s
  evm.model.supercontig_660.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSARGKLYEFCS 59
                                 79***********************************************96 PP
2K-box93.63.4e-3182172999
                        K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                                  +++++ ++ +q++ kLk+++e Lq++qRhllGe+L++L  keL+qLe+qL+ sl+++Rs+K++++++q++el+kke++l ++
  evm.model.supercontig_660.1  82 QTARDKQNNYQDYLKLKSKVEILQHSQRHLLGEELGDLGTKELEQLEHQLDMSLRQVRSTKTQFMIDQLSELRKKEEMLMDT 163
                                  5677889*************************************************************************** PP

                        K-box  91 nkaLrkkle 99 
                                  n+ Lr+kle
  evm.model.supercontig_660.1 164 NRVLRRKLE 172
                                  *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.403161IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-42160IPR002100Transcription factor, MADS-box
CDDcd002651.05E-44278No hitNo description
SuperFamilySSF554557.33E-34283IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-323859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2782171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.36787177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSA RGKLYEFCSS  60
SSMVKTLERY QRVSYEALEA TQTARDKQNN YQDYLKLKSK VEILQHSQRH LLGEELGDLG  120
TKELEQLEHQ LDMSLRQVRS TKTQFMIDQL SELRKKEEML MDTNRVLRRK LEASDAALQP  180
HSWETTDHNI PFSRELTNPD AFYQPLQCNN TLQIGYNPAV TADEMIIASS SQNINGFIPG  240
WML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-259217122101Developmental protein SEPALLATA 3
4ox0_B4e-259217122101Developmental protein SEPALLATA 3
4ox0_C4e-259217122101Developmental protein SEPALLATA 3
4ox0_D4e-259217122101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP9427784e-60KP942778.1 Hibiscus sabdariffa var. sabdariffa clone HsMADS13RF1 MADS-box 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903284.10.0MADS-box protein CMB1
SwissprotQ8LLR21e-114MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLD7T9Z71e-124D7T9Z7_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_660.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.21e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]