PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_661.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 392aa    MW: 43350.4 Da    PI: 6.2412
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_661.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.93.5e-21110162155
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  k+r+ Wt eLH++Fv+av+ L G+ +A Pk+il+ m+v+g   eh+ SHLQkYRl
  evm.model.supercontig_661.1 110 KNRIIWTDELHNKFVHAVDFL-GA-QAFPKNILQQMNVPGSRKEHISSHLQKYRL 162
                                  68*******************.54.59***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.39E-5156IPR011006CheY-like superfamily
PROSITE profilePS5011014.222159IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.6E-6156No hitNo description
SuperFamilySSF466894.48E-14108166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-20109166IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17110162IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDKYQFLETM TRVSQLPVIV MSTDQDENGM LGSLQCGAEF HLVKPITWND VKNLWQFSVL  60
RKIGLSRSAS CSSSSDQGYD ANHSSSKKKQ PENSSSRSSD DNSDSSIVKK NRIIWTDELH  120
NKFVHAVDFL GAQAFPKNIL QQMNVPGSRK EHISSHLQKY RLSLKRQQAE RLYFSPNLGL  180
YQFSSNPINM GRGGIYQFPG LQKGIALTFH PDINYIFKEQ NVNPANLQAA TSVGRLFGAP  240
AANFDVRQLP SSSRAAANFP QMSSVTQTLK GLVIGETSYN NNNNWTISGG DYLDYQLIDE  300
STDWRLLLES FTGEELTHVP QPQPVQEQVA AQPAPALQML HPEPTPQIAQ PAAAEAAPQQ  360
SNFEYDMFGA DGYGGVDGLF NMLTVTSSGF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-15109166462ARR10-B
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911965.11e-139two-component response regulator ARR14-like
STRINGevm.model.supercontig_661.10.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-23response regulator 2