PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_69.33
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 171aa    MW: 19251 Da    PI: 9.3041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_69.33genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-08856254
                                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                          HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                 r+  n+ Er+RR r+++  ++L +llP++     ++++  e   +A +YI++L
  evm.model.supercontig_69.33  8 RQHRNIQERNRRLRMRELCSTLVSLLPPQ----PTRVTVYELIGEAANYINQL 56
                                 8999************************6....39****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.86E-5561No hitNo description
PROSITE profilePS5088812.201656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-10670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-9869IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-5856IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-41262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MERASSSRQH RNIQERNRRL RMRELCSTLV SLLPPQPTRV TVYELIGEAA NYINQLKERI  60
KAANDERNQV LKLLGGGNGD RTGEEIRAVV KLTSRNQCSL EVNIISGTNK TFMLHEVISI  120
LQEEGAQVSN IALHNIVGHR TIYVIHSQAI NSRIGLETSR IEERLLDLLC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1718RQHRNIQERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_69.33
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895881.11e-120transcription factor bHLH168-like
STRINGevm.model.supercontig_69.331e-119(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Representative plantOGRP13451147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-30bHLH family protein