PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_69.72

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

YABBY

Protein Properties

Length: 190aa MW: 21147.7 Da PI: 8.0596

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_69.72	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	156.4	2.4e-48	1	143	23	169
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +vsvP +sl++ vtvrCG+Ctsllsvn++k+s lla+ s+ d ++++e + k + ++ ++s s+ evm.model.supercontig_69.72 1 MVSVPCSSLSTAVTVRCGCCTSLLSVNMMKSSfvplhLLLASLSR-DG---------EGKKEASPKDGDGCRRLDRQSPSML 72 59************************99884443222233332.22.........2222222222222222222222222 PP YABBY 100 klsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + s+ e+e+ ++ + v++PPekrqr+Psayn+fikeei+r+ka+nP+++h+eafs+aaknWa fP+ h+ evm.model.supercontig_69.72 73 TSSDYEEEDGIHINQiVNKPPEKRQRAPSAYNCFIKEEIRRLKAHNPNMTHKEAFSTAAKNWAQFPPTHYR 143 22444555555666659**************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-49	1	142	IPR006780	YABBY protein
SuperFamily	SSF47095	3.8E-9	87	139	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.3E-6	90	140	IPR009071	High mobility group box domain
CDD	cd00084	0.00158	98	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MVSVPCSSLS TAVTVRCGCC TSLLSVNMMK SSFVPLHLLL ASLSRDGEGK KEASPKDGDG 60 CRRLDRQSPS MLTSSDYEEE DGIHINQIVN KPPEKRQRAP SAYNCFIKEE IRRLKAHNPN 120 MTHKEAFSTA AKNWAQFPPT HYRKDVECGE NQDPSETTWN SDALEGSTAG FRERKAPRNS 180 IWARTPFDQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_69.72

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021895878.1	1e-140	axial regulator YABBY 4
Swissprot	Q9LDT3	3e-62	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1R3I6W4	2e-74	A0A1R3I6W4_COCAP; YABBY protein
STRING	evm.model.supercontig_69.72	1e-141	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8044	27	40
Representative plant	OGRP9612	7	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-64	YABBY family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_69.72

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]