PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.134
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 479aa    MW: 53099.3 Da    PI: 8.1296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.134genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-1781125147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                  r +WT eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
  evm.model.supercontig_7.134  81 REKWTDEEHQRFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 125
                                  789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.02E-1675129IPR009057Homeodomain-like
PROSITE profilePS5129421.3576130IPR017930Myb domain
TIGRFAMsTIGR015571.9E-1679128IPR006447Myb domain, plants
SMARTSM007171.4E-1280128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-981123IPR009057Homeodomain-like
PfamPF002492.7E-1481124IPR001005SANT/Myb domain
CDDcd001671.72E-1083126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSLFNSFTEE SEISTRAYST ICSQSAQKHG EEKMSETANS TTCSFSTIAD SETVVQVNRL  60
GSFNNGSTPK ARKPYTITKQ REKWTDEEHQ RFLEALKLYG RGWRQIEEHV GTKTAVQIRS  120
HAQKFFSKVV KESCSESSIK PIDIPPPRPK RKPVHPYPRK SSVSLKGRAI QAERIVSPNL  180
LASGKETQSP TSVLSAVSEQ RNECSSPSCT SDMHSSSFLS IDKENEYVTS SLSPEQEKIS  240
STKLDSCSKI PSSSLGDAAA AASYMHIKLF GKTVLVTDAQ KSSPGVKNNK FPTSQTHEEN  300
LDTDNINLIQ TFQSKQLDTH LSLGTGAVNK NMNWLPAERP VVHFMDCDGE RTFVEATADS  360
PLESITQYQA LPSFSLTLSN QMHLHSPVSF CGDENFKEKR NLNGKSCANS VAGLENREKN  420
SESDSQCIKP HSRNCSKGFV PYKRCFTERD MKSCVMGSEE QDGQRARMTL EKAWNSLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.134
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907539.10.0protein REVEILLE 7-like
SwissprotB3H5A81e-53RVE7_ARATH; Protein REVEILLE 7
TrEMBLA0A2H5PXP01e-119A0A2H5PXP0_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_7.1340.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-43MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]