PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.163
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 358aa    MW: 40696.1 Da    PI: 4.6781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.163genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.4e-35461372102
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
                 HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                                  Fl+k+++++ed+++++++sws+  nsf+v+d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF++
  evm.model.supercontig_7.163  46 FLTKTFDMVEDRSTDSIVSWSRARNSFIVWDSHKFSSTLLPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFAN 118
                                  9****************************************************************999.........***** PP

                                  SXXXXXXXXXXXXXXXXXX CS
                 HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                                  + F  g+++ll++ikr+++
  evm.model.supercontig_7.163 119 EGFLGGQRHLLKSIKRRRH 137
                                  ****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-5842135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.7E-3742135IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3342135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDRVRQKVKE EDTTAASSSP SSSCSSSSTF SAQPMQGLHD VGPPPFLTKT FDMVEDRSTD  60
SIVSWSRARN SFIVWDSHKF SSTLLPRYFK HNNFSSFIRQ LNTYGFRKVD PDRWEFANEG  120
FLGGQRHLLK SIKRRRHVSH GTEYQAAGAC VELGQFGLEG EIEILKRDRN VLMTEIVRLR  180
KQQQNSRDQV EEMENRLQRT EKRQQQIMTF FAKALKNPSF VQQFIQNTEA RRLQDAAVGR  240
KRRLTASPSV ESLEEAALAG IYPGKEEEEE KELETIETLF SAAMDDPSSS DVKDPGDTGD  300
DTIWEELIIE DVIGSNPEEQ VEPLVDGESE FPNSTDWCDD DLQHLVDQMG YLGSNPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-244413527129Heat shock factor protein 1
5d5v_B2e-244413527129Heat shock factor protein 1
5d5v_D2e-244413527129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKSIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.163
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907613.10.0heat stress transcription factor A-2 isoform X2
SwissprotP411521e-124HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A067KQI11e-152A0A067KQI1_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_7.1630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116722732
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-116heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]