PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.53
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 262aa    MW: 28817.7 Da    PI: 8.8037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.53genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-1274120354
                                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 ++h+e+ErrRR+riN  +++Lr l+P+      +K++Ka+ L +++  +k+L
  evm.model.supercontig_7.53  74 KSHSEAERRRRERINAHLDTLRGLVPST-----GKMDKATLLAEVISQVKEL 120
                                 58*************************9.....9**********99988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.30771120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-1074120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-1375126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1375123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAAFTFNANS SSGSDFTAFF NPFSYSLGGS KGVFKDESVS QSLGLDKERG ELVKTPMRVG  60
KKEASEAKAL AVLKSHSEAE RRRRERINAH LDTLRGLVPS TGKMDKATLL AEVISQVKEL  120
KKHALEASRG IPIPMDDDEV KVETCDEESK EGTFYFKASL CCDYRPELLI DLRQALGSLQ  180
LKVVKAEMST LGSRLKHVFI FTSHKGHIDD ANDRLVFADS VHRALSAVVD KASAMLEYSS  240
RTTLPNKRQR ISFFDSSSSS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_7.53
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907719.10.0transcription factor bHLH30-like
TrEMBLA0A067KLJ61e-102A0A067KLJ6_JATCU; Uncharacterized protein
STRINGevm.model.supercontig_7.530.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM155811017
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-35bHLH family protein