PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_70.104
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 231aa    MW: 26768.2 Da    PI: 10.6691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_70.104genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.16.2e-31161451128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lp G+rF+Pt+eel+v+yLk+k+ g +l++  +i+e+d+++++Pw Lp  +  +ek+ yfFsk ++   +g        sg
  evm.model.supercontig_70.104  16 LPIGYRFRPTEEELLVHYLKRKAFGFPLPA-LIIPEFDVFTTDPWILPGDM--KEKNRYFFSKGSTMGING------SGSG 87 
                                   699*************************99.67***************665..67899****998876554......579* PP

                           NAM  82 yWkatgkdkevlsk..kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                                   yWk  gk+k+++++  +++  g +k+L+fy         + ++p+++kt+W+mheyrl
  evm.model.supercontig_70.104  88 YWKPIGKEKKIVASsgTNQILGSRKSLAFYeskkkkkktSHDHPHATKTRWIMHEYRL 145
                                   ************997667779*********77665544335677788*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3911169IPR003441NAC domain
PROSITE profilePS5100539.43816170IPR003441NAC domain
PfamPF023651.7E-2017145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MERSSSIFVV NGGIRLPIGY RFRPTEEELL VHYLKRKAFG FPLPALIIPE FDVFTTDPWI  60
LPGDMKEKNR YFFSKGSTMG INGSGSGYWK PIGKEKKIVA SSGTNQILGS RKSLAFYESK  120
KKKKKTSHDH PHATKTRWIM HEYRLSIPPT TQMSEKKHED DWSVYCVFQR KRKARRSHGS  180
NLPCRCSWKK KQEEEEARKS YKIALIILVL HRLLHQAPLM EPLKIVSLRH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-301417615171NO APICAL MERISTEM PROTEIN
1ut4_B6e-301417615171NO APICAL MERISTEM PROTEIN
1ut7_A6e-301417615171NO APICAL MERISTEM PROTEIN
1ut7_B6e-301417615171NO APICAL MERISTEM PROTEIN
3swm_A7e-301417618174NAC domain-containing protein 19
3swm_B7e-301417618174NAC domain-containing protein 19
3swm_C7e-301417618174NAC domain-containing protein 19
3swm_D7e-301417618174NAC domain-containing protein 19
3swp_A7e-301417618174NAC domain-containing protein 19
3swp_B7e-301417618174NAC domain-containing protein 19
3swp_C7e-301417618174NAC domain-containing protein 19
3swp_D7e-301417618174NAC domain-containing protein 19
4dul_A6e-301417615171NAC domain-containing protein 19
4dul_B6e-301417615171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168175QRKRKARR
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_70.104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895617.11e-148NAC domain-containing protein 83
TrEMBLA0A061EEQ15e-57A0A061EEQ1_THECC; NAC domain containing protein 83, putative
STRINGevm.model.supercontig_70.1041e-170(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Representative plantOGRP1179656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.15e-48NAC domain containing protein 84