PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_73.54
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 175aa    MW: 19458.3 Da    PI: 6.6344
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_73.54genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.6e-13113153445
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
              Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                  W ++E+ ll++++ ++G g+W+ +a+++g +++  qc+++++
  evm.model.supercontig_73.54 113 WNADEEILLLEGIDMYGFGNWAEVAEHVG-TKSKSQCIDHYN 153
                                  *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002913.1E-104994IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.9255396IPR000433Zinc finger, ZZ-type
PfamPF005693.3E-105391IPR000433Zinc finger, ZZ-type
SuperFamilySSF578505.06E-1553116No hitNo description
CDDcd023351.00E-2353101No hitNo description
PROSITE patternPS0135705582IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.99E-13105159IPR009057Homeodomain-like
PROSITE profilePS5129321.487108160IPR017884SANT domain
SMARTSM007171.6E-11109158IPR001005SANT/Myb domain
PfamPF002494.8E-13112153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-9113154IPR009057Homeodomain-like
CDDcd001672.01E-13113153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKSCLPVLVL SVMKSLFSWS SRPKRKKNSS NSDNIENAAF PGQATSEGKG ALYHCNYCNK  60
DITSVVRVKC AVCPDFDLCV ECFSVGAEVT PHKCNHPYRI MDNLSFPLIC PDWNADEEIL  120
LLEGIDMYGF GNWAEVAEHV GTKSKSQCID HYNAVYMNSP CFPLPVRLVK DQNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E3e-38531655117Transcriptional adapter 2
6cw3_G3e-38531655117Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_73.54
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895411.11e-119transcriptional adapter ADA2-like
SwissprotQ75LL65e-73TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A0D2UXF38e-85A0A0D2UXF3_GOSRA; Transcriptional adapter
TrEMBLA0A2P5W4924e-86A0A2P5W492_GOSBA; Uncharacterized protein
TrEMBLA0A2P5X7M71e-84A0A2P5X7M7_GOSBA; Transcriptional adapter
STRINGevm.model.supercontig_73.541e-128(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2159922
Representative plantOGRP2480912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]