PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_74.64
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 311aa    MW: 34191 Da    PI: 4.3799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_74.64genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.92.4e-36221142103
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
                 HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                                  Fl+k+y++++d++++elisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++
  evm.model.supercontig_74.64  22 FLTKTYQLVDDPSVDELISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFAN 94 
                                  9*****************************************************************99.........***** PP

                                  SXXXXXXXXXXXXXXXXXXX CS
                 HSF_DNA-bind  84 ksFkkgkkellekikrkkse 103
                                  + F++g+k ll++i+r+k +
  evm.model.supercontig_74.64  95 DCFRRGEKALLRDIQRRKIS 114
                                  *****************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.0E-5918111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.52E-3519111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-3819111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.3E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-212245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-216072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-217385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPGEQTAESP AGESQRSLPT PFLTKTYQLV DDPSVDELIS WNEDGSTFIV WRPAEFARDL  60
LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW EFANDCFRRG EKALLRDIQR RKISQPAVAP  120
ATSVTAAAAT PTVAYAASPS NSGEEQVISA SSSPVAGAVV AGATLQRTTS CSTAPELIEE  180
NERLRKENMQ LSDELTRLKG LCNNILALMT NYASSQMEGS SPQEGQALEL MPGRQSAEPM  240
EMEDIAAKLD EEVTPRLFGV SIGVKRVRRE DEEESQGVQE EEIEPGSEVK CEPLDGSSDN  300
HETSWLELGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-272211420123Heat shock factor protein 1
5d5u_B9e-282211129129Heat shock factor protein 1
5d5v_B9e-282211129129Heat shock factor protein 1
5d5v_D9e-282211129129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_74.64
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895361.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-114HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4TK861e-142V4TK86_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_74.640.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-106HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]