PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_74.86
Common NameERF1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 214aa    MW: 23524.3 Da    PI: 4.9241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_74.86genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.1e-1560107355
                          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+G+r+++   +Wv+eIr+p++   ++r++lg++ ++e+Aa+a++ a+++l+g
  evm.model.supercontig_74.86  60 YRGIRRRS--DKWVSEIREPRK---TTRIWLGTYPSPEMAAAAYDVAALALKG 107
                                  9***9765..7********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-2559116IPR001471AP2/ERF domain
SMARTSM003801.2E-2659121IPR001471AP2/ERF domain
PROSITE profilePS5103220.29759115IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-1859116IPR016177DNA-binding domain
PfamPF008471.7E-960107IPR001471AP2/ERF domain
CDDcd000189.42E-1660117No hitNo description
PRINTSPR003672.7E-66071IPR001471AP2/ERF domain
PRINTSPR003672.7E-697117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MADDHDPKIL PSNVSQLDQP DHHDPHSQTA LPNIPTCEIP DPSKFTNMAS SSSTRKHPMY  60
RGIRRRSDKW VSEIREPRKT TRIWLGTYPS PEMAAAAYDV AALALKGGDA VLNFPALVGT  120
YPVPKSTSPA DIRDAATAAA ALKKPPTAGD DPAPDHHQYK GEFIDEEELL NMPNLLVDMA  180
EGMMVSPPRI SFPPSDDSQE NFDHGESLWS YFY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_74.86
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5329880.0JX532988.1 Carica papaya ethylene-responsive transcription factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895320.11e-157ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ904e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLT1QCH21e-154T1QCH2_CARPA; Ethylene-responsive transcription factor 1
STRINGevm.model.supercontig_74.861e-156(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-46ERF family protein
Publications ? help Back to Top
  1. Li X, et al.
    Isolation and characterization of ethylene response factor family genes during development, ethylene regulation and stress treatments in papaya fruit.
    Plant Physiol. Biochem., 2013. 70: p. 81-92
    [PMID:23770597]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]