PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_75.57

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

C3H

Protein Properties

Length: 241aa MW: 27029.1 Da PI: 7.7289

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_75.57	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.7e-09	37	61	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f++ G C+ G++C+FaHg evm.model.supercontig_75.57 37 FKTRVCAKFRA-GNCRNGENCNFAHG 61 69*******.***********9 PP
2	zf-CCCH	27.9	4.2e-09	99	121	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yG+rC+F H evm.model.supercontig_75.57 99 MKLCKKFYNGEECPYGERCNFLH 121 689****66********** PP
3	zf-CCCH	35	2.4e-11	177	203	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + t +C++ d+C+FaHg+ evm.model.supercontig_75.57 177 WKTKLCTKWETTSHCPFSDKCHFAHGQ 203 8************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	9.8E-15	34	69	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.32E-8	35	67	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.159	36	63	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.6E-6	36	62	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.4E-7	37	61	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-7	96	123	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.003	96	123	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.873	96	124	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.4E-6	99	121	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-8	99	122	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-15	172	207	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-10	172	208	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.7E-4	176	203	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.404	176	204	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-8	177	203	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MSHVNDEDNQ SSSSPYQSNS RTPINPPVNK GTSNIFFKTR VCAKFRAGNC RNGENCNFAH 60 GVEDLRQPPP NWQELVGARG DEERSSGNWE DDQRIIHRMK LCKKFYNGEE CPYGERCNFL 120 HEDPAKFRDD NRFRESSAIS IGTTPPPVVH GSGGTQSEVN RSANNNNMMM MMKPVYWKTK 180 LCTKWETTSH CPFSDKCHFA HGQAELQMFV GRVEGDGGNT TSTVAKPNIV AANDASMMKT 240 V

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_75.57

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021895156.1	1e-180	zinc finger CCCH domain-containing protein 39, partial
Swissprot	Q9LT81	3e-85	C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBL	A0A251JD93	1e-114	A0A251JD93_MANES; Uncharacterized protein
STRING	evm.model.supercontig_75.57	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10066	25	36
Representative plant	OGRP2045	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	6e-85	C3H family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_75.57